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RNA-sequencing libraries were prepared using the QuantSeq 3 mRNA-Seq Library Prep kit FWD (Lexogen), and sequencing was performed on a HiSeq 4000 at the UC Davis Genome Center

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PMID 16709566

Somatic mutation calling Somatic variants were called from WES using TNscope with default settings and custom postfilters on the basis of allele frequency, coverage, tumor and normal limits of detection, strand bias, problematic regions and homopolymer repeats

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Autophagic cell death restricts chromosomal instability during replicative crisis